<br />Pearson Lab
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Basal body analysis routine
Galati et al., 2015

Picture

Sample file to test analysis routine

REPRESENTATIVE TETRAHYMENA IMAGE FILE.nd2
File Size: 208941 kb
File Type: nd2
Download File

FIJI version required for analysis routine​

fiji.app.zip
File Size: 160110 kb
File Type: zip
Download File

Final algorithm
(confocal images)

final_full_algorithm.ijm
File Size: 71 kb
File Type: ijm
Download File

Final algorithm no QC
(Widefield images)
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final_full_algorithm_no_qc.ijm
File Size: 69 kb
File Type: ijm
Download File

Generate results (export analysis results)

 
generate_results.ijm
File Size: 20 kb
File Type: ijm
Download File

USER INSTRUCTIONS

Centrosome analysis code
Ganapathi Sankaran et al., 2020
​

Picture

Instructions 

installation_runnning_instructions.docx
File Size: 13 kb
File Type: docx
Download File

Assess code

 https://github.com/bharath272/centrosome-analysis

Useful Links
Tetrahymena Genome Database
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ImageJ
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CU Environmental Health and Safety
NIGMS

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  • Research
  • People
  • Publications
  • Image analysis routines
  • Pictures